Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015911340.1_cds_XP_016461329.1_54657
CDS Infomation

[gene=LOC107784679] [db_xref=GeneID:107784679] [protein=chloride channel protein CLC-e-like isoform X4] [protein_id=XP_016461329.1] [location=join(27875..28291,28708..29089,41436..41636,45465..45931,55893..56458,70380..70389)] [gbkey=CDS]
Sequence

ATGATTAGCGGCCAAAACACTGTGCTGCACAATCCTCCTAATTCGCTCTTCAATTCCTTA
TCTCCTCGCCATATCTGTATATCTTTCTGTAACGACAAAGCTTTAAAAAAGTCAGTCACG
CACTCCGCCCCTCGGTTTGCTCGTCTGTTAAACAATGAATCACGGAAGTTGTTGGGTCGT
CATCCAAATTGCTGGCCTTGGGCTCGACGACCATCTCTTCCTCCGGGACGTTCCTCTGAC
GGAAACATTGAAAAAGAACAAGATATGTGCGACAGCAGCAAAGTCGATAGTGATAGTGGC
ATCCAGATAGGATCTCTGCTCGAGGAAGTTATCCCACAAGGCAATAATACCGCTATAATC
TCGGCTTGCTTTGTTGGCCTCTTCACCGGTATCAGTGTCGTGCTTTTCAACGCTGCGGTT
CATGAAATACGTGATCTTTGTTGGGATGGAATTCCATATCGAGCTGCCTCAGAGGAGCCC
ATTGGAGTACATTGGCAACGTGTAATCTTAGTACCAGCTTGTGGCGGTTTGGTAGTCAGC
TTTTTGAATGCCTTCCGAGCCACTCTGGAGGTTTCAACTGAAGAAAGTTGGACATCATCT
GTTAAATCTGTATTGGAACCAGTTTTGAAGACAATGGCCGCTTGTGTCACATTAGGAACT
GGGAATTCCTTAGGACCAGAAGGCCCTAGTGTTGAAATTGGCACATCTGTTGCCAAGGGA
GTTGGAGCTCTGCTTGATAAAGGTGGTCGTAGAAAGCTGTCACTCAAGGCTGCTGGATCA
GCTGCTGGAATCGCTTCTGGATTTAATGCTGCTGTCGGGGGCTGTTTCTTTGCTGTGGAA
TCTGTGTTATGGCCATCACCTGCAGAGTCCTCCTTGTCCTTAACAAATACGACTTCAATG
GTTATTCTCAGTGCTGTTATAGCTTCTGTAGTCTCAGAAATTGGTCTTGGCTCTGAACCT
GCATTTGCGGTCCCAGGATATGATTTTCGTACACCTACTGAGCTGCCGCTTTATCTTCTG
CTGGGCATCTTTTGTGGCTTAGTTTCAGTGGCATTATCAAGTTGTACATCATTTATGCTG
CAAATAGTGGAAAATATTCAAACGACCAGCGGCATGCCAAAAGCAGCTTTTCCTGTCCTG
GGTGGTCTTCTGGTTGGGCTGGTAGCTTTAGCATATCCTGAAATCCTTTACCAGGGTTTT
GAGAATGTTAATATTTTGCTAGAATCTCGCCCACTAGTGAAAGGCCTCTCCGCTGATCTG
TTGCTCCAGCTTGTAGCTGTCAAAATAGTAACAACTTCATTATGTCGAGCCTCTGGATTG
GTTGGAGGCTACTATGCACCATCTCTATTCATCGGTGCTGCTACTGGAACTGCATATGGG
AAAATTGTTAGCTACATTATCTCTCATGCTGATCCAATCTTTCATCTTTCCATCTTGGAA
GTTGCATCCCCACAAGCATATGGCCTGGTTGGCATGGCTGCTACTCTTGCTGGTGTCTGT
CAGGTGCCTCTCACTGCGGTTTTGCTTCTCTTTGAACTGACACAGGATTATCGGATAGTT
CTGCCCCTCTTGGGAGCTGTGGGGTTGTCTTCTTGGGTTACATCTGGACAAACAAGGAAA
AGTGTAGTGAAGGATAGAGAAAAACTAAAAGATGCAAGAGCCCACATGATGCAGCGACAA
GGAACTTCTTTCTCCAACATTTCTAGTTTAACTTATTCTTCAGGTTCACCTTCACAGAAA
GAGAGTAACCTCTGCAAACTTGAGAGTTCCCTCTGTCTTTATGAATCTGATGATGAAGAA
AATGATTTGGCAAGGACAATTCTAGTTTCACAGGCAATGAGAACACGATATGTGACAGTT
CTAATGAGCACCTTGCTAATGGAGACCATATCCCTCATGCTAGCTGAGAAGCAATCTTGT
GCAATAATAGTTGATGAAAATAATTTTCTCATTGGTCTGCTGACACTTGGTGATATCCAG
AATTACAGCAAGTTGCCAAGAACAGAGGGCAATTTCCAGGAGGTAGCTTCTTGGAGCTTG
TAG

Peptide Sequence

PEP ID

XP_016461329.1
PEP Infomation

PREDICTED: chloride channel protein CLC-e-like isoform X4 [Nicotiana tabacum]
Sequence

MISGQNTVLHNPPNSLFNSLSPRHICISFCNDKALKKSVTHSAPRFARLLNNESRKLLGR
HPNCWPWARRPSLPPGRSSDGNIEKEQDMCDSSKVDSDSGIQIGSLLEEVIPQGNNTAII
SACFVGLFTGISVVLFNAAVHEIRDLCWDGIPYRAASEEPIGVHWQRVILVPACGGLVVS
FLNAFRATLEVSTEESWTSSVKSVLEPVLKTMAACVTLGTGNSLGPEGPSVEIGTSVAKG
VGALLDKGGRRKLSLKAAGSAAGIASGFNAAVGGCFFAVESVLWPSPAESSLSLTNTTSM
VILSAVIASVVSEIGLGSEPAFAVPGYDFRTPTELPLYLLLGIFCGLVSVALSSCTSFML
QIVENIQTTSGMPKAAFPVLGGLLVGLVALAYPEILYQGFENVNILLESRPLVKGLSADL
LLQLVAVKIVTTSLCRASGLVGGYYAPSLFIGAATGTAYGKIVSYIISHADPIFHLSILE
VASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWVTSGQTRK
SVVKDREKLKDARAHMMQRQGTSFSNISSLTYSSGSPSQKESNLCKLESSLCLYESDDEE
NDLARTILVSQAMRTRYVTVLMSTLLMETISLMLAEKQSCAIIVDENNFLIGLLTLGDIQ
NYSKLPRTEGNFQEVASWSL

Transcript Sequence

Gene sequence data has not been registered.